Professor Catherine Kidner, Biodiversity Genomics and Analytics Lead
Email: c.kidne@rbge.org.uk
Phone: +44 (0)131 248 2838
Understanding Diversity
We are interested in determining the genetics underlying differences between species. We would like to know how many genetic changes and what type of changes determine differences in plant growth and form. A combination of classical genetics and new sequencing technologies is being used to link the variation in form to variation in the sequence and expression of genes. We are particularly interested applying these techniques to tropical species, as the tropics contain most of the world’s diversity but have been genetically understudied.
Methods
We are interested in the application of large scale comparative sequence analysis to understanding patterns of diversity. We use transcriptomes, genomes and phylogenies to explore the diversity of tropical plants. We use the resources of the living collections at RBGE for expression analysis and are using Hyb-Seq to mine genetic data from herbarium samples.
Study Systems
Begonia
Begonia is one of the largest angiosperm genera and well represented in flora across the tropics. Understanding the drivers and the results of speciation patterns in Begonia will help us understand tropical diversity. We have produced a genetic map, several transcriptomes, a reference and genomes for the group and are using these to identify the genetics underlying species-level diversity patterns.
Inga
Inga is a group of about 300 species of leguminous trees of the neotropics. It is cultivated as a shade tree in agro-forestry. We have been using Hyb-Seq to produce a well resolved phylogeny for the genus and are using comparative transcriptomics to identify traits associated with species-level variation, particularly in herbivore defence.
Other groups
We are interested all aspects of comparative genetics and genomics in underexplored plants.
Current Projects, lab members and collaborations
Speciation processes in Begonia of Colombia (Sebastian Gomez Giraldo)
The fate of duplicated genes in Begonia (Lucy Turnbull and Charlie Millar)
Inga’s colonisation of the Colonisation of the Chocó (Kelly Gonzalez)
Stomatal patterning in Begonia (Thu Ly)
Collaboration with Rucha Karnik, University of Glasgow
Dynamic genomes and speciation
Collaboration with Lucia Campos Dominguez, Kuo-Fang Chung and Yu-Hsin Tseng, Academia Sinica.
Evolution of secondary metabolism in Inga
Collaboration with Toby Pennington (University of Exeter)
Links
google scholar: https://scholar.google.co.uk/citations?user=xMKV7xEAAAAJ&hl=en
Scopus profile: https://www.scopus.com/authid/detail.uri?authorId=6701656179